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A Primer for Computational Biology

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A Primer for Computational Biology

Shawn O'Neil · Oregon State University · 2017

A Primer for Computational Biology aims to provide life scientists and students the skills necessary for research in a data-rich world. The text covers accessing and using remote servers via the command-line, writing programs and pipelines for data analysis, and provides useful vocabulary for interdisciplinary work. The book is broken into three parts: Introduction to Unix/Linux: The command-line is the “natural environment” of scientific computing, and this part covers a wide range of topics, including logging in, working with files and directories, installing programs and writing scripts, and the powerful “pipe” operator for file and data manipulation. Programming in Python: Python is both a premier language for learning and a common choice in scientific software development. This part covers the basic concepts in programming (data types, if-statements and loops, functions) via examples of DNA-sequence analysis. This part also covers more complex subjects in software development such as objects and classes, modules, and APIs. Programming in R: The R language specializes in statistical data analysis, and is also quite useful for visualizing large datasets. This third part covers the basics of R as a programming language (data types, if-statements, functions, loops and when to use them) as well as techniques for large-scale, multi-test analyses. Other topics include S3 classes and data visualization with ggplot2.

CC BY-NC-SABiologyComputer Science 0 lượt xem
Microbiology

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Microbiology

Nina Parker; Mark Schneegurt; Anh-Hue Thi Tu; Summer Allen · OpenStax, Rice University

Microbiology covers the scope and sequence requirements for a single-semester microbiology course for non-majors. The book presents the core concepts of microbiology with a focus on applications for careers in allied health. The pedagogical features of the text make the material interesting and accessible while maintaining the career-application focus and scientific rigor inherent in the subject matter. Microbiology’s art program enhances students’ understanding of concepts through clear and effective illustrations, diagrams, and photographs. Microbiology is produced through a collaborative publishing agreement between OpenStax and the American Society for Microbiology Press. The book aligns with the curriculum guidelines of the American Society for Microbiology.

CC BY-NC-SAScience 0 lượt xem
Concepts of Biology

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Concepts of Biology

Nick Reeves; Jean DeSaix; Barbara Kuehner; Brenda Leady · OpenStax, Rice University

Concepts of Biology is designed for the typical introductory biology course for nonmajors, covering standard scope and sequence requirements. The text includes interesting applications and conveys the major themes of biology, with content that is meaningful and easy to understand. The book is designed to demonstrate biology concepts and to promote scientific literacy.

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Biology for AP® Courses

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Biology for AP® Courses

Yael Avissar; Jung Choi; Jean DeSaix; Vladimir Jurukovski · OpenStax, Rice University

Biology for AP® Courses covers the scope and sequence requirements of a typical two-semester Advanced Placement® biology course. The text provides comprehensive coverage of foundational research and core biology concepts through an evolutionary lens. Biology for AP® Courses was designed to meet and exceed the requirements of the College Board’s AP® Biology framework while allowing significant flexibility for instructors. Each section of the book includes an introduction based on the AP® curriculum and includes rich features that engage students in scientific practice and AP® test preparation; it also highlights careers and research opportunities in biological sciences. Advanced Placement® and AP® are trademarks registered and/or owned by the College Board, which was not involved in the production of, and does not endorse, this textbook.

CC BY-NC-SAScience 0 lượt xem
Biology 2e

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Biology 2e

Mary Ann Clark; Matthew Douglas; Jung Choi · OpenStax, Rice University

Biology 2e is designed to cover the scope and sequence requirements of a typical two-semester biology course for science majors. The text provides comprehensive coverage of foundational research and core biology concepts through an evolutionary lens. Biology includes rich features that engage students in scientific inquiry, highlight careers in the biological sciences, and offer everyday applications. The book also includes various types of practice and homework questions that help students understand—and apply—key concepts. The 2nd edition has been revised to incorporate clearer, more current, and more dynamic explanations, while maintaining the same organization as the first edition. Art and illustrations have been substantially improved, and the textbook features additional assessments and related resources. The first edition of Biology by OpenStax is available in web view here.

CC BY-NC-SAScience 0 lượt xem
Crop Genetics

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Crop Genetics

Suza and Lamkey · Iowa State University

This book provides an introduction to genetic concepts such as reproductive systems, recombination, mutation, segregation and linkage analysis, inbreeding, quantitative inheritance, fertility regulation, population genetics and polyploidy.

CC BY-NCAgriculture and HorticultureBiology 0 lượt xem
BIOL 40C Lab Manual: Metabolism, Regulation, Defense, Excretion

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BIOL 40C Lab Manual: Metabolism, Regulation, Defense, Excretion

Susmita Sengupta and Lakshmikanta Sengupta · De Anza College

This lab manual covers the endocrine, lymphatic, digestive, urinary, and reproductive systems, linking them to homeostasis and clinical concerns like endocrine disorders and infertility. Activities move from identification to deeper reasoning through visuals, retrieval practice, and collaborative work, connecting back to earlier systems and recurring themes like hormonal regulation and fluid balance, with glossaries throughout for consistent vocabulary.

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Forest Measurements: An Applied Approach

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Forest Measurements: An Applied Approach

Joan DeYoung · Mt. Hood Community College

This is a forest measurements textbook written for field technicians. Silvicultural applications and illustrations are provided to demonstrate the relevance of the measurements. Special “technique tips” for each skill are intended to help increase data collection accuracy and confidence. These include how to avoid common pitfalls, effective short cuts, and essentials for recording field data correctly. The emphasis is on elementary skills; it is not intended to be a timber cruising guide.

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Introduction to Botany

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Introduction to Botany

Alexey Shipunov · Minot State University

This text is a re-structuring the “classical” course into a more logical sequence of themes with two main ideas: (1) put as much plant-related information as possible into an evolutionary context and (2) explain complicated problems with simple words and metaphors.

CC0 / Public domainBotanyBiology 0 lượt xem
Plant Anatomy and Physiology

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Plant Anatomy and Physiology

Sean Bellairs · Charles Darwin University

This text was created to support teaching of an introductory unit on plant environmental physiology at Charles Darwin University. It makes use of various images of cells and tissues to introduce and illustrate the range of plant organelles, cells, tissues and organs.

CC BY-SABotanyBiology 0 lượt xem
Biotechnology: Basic Lab Techniques

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Biotechnology: Basic Lab Techniques

Victor Pham · Irvine Valley College

LibreTexts

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Genetics, Agriculture, and Biotechnology

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Genetics, Agriculture, and Biotechnology

Walter Suza and Donald Lee · University of Iowa

This textbook provides an introduction to plant genetics and biotechnology for the advancement of agriculture. A clear and structured introduction to the topic for learners new to the field of genetics, the book includes: an introduction to the life cycle of the cell, DNA and how it relates to genes and chromosomes, DNA analysis, recombinant DNA, biotechnology, and transmission genetics.

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Introduction to Environmental Science

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Introduction to Environmental Science

Caralyn Zehnder, Kalina Manoylov, Samuel Mutiti, Christine Mutiti, Allison VandeVoort, & Donna Bennett · Georgia College and State University

This text uses the basic principles of biology and earth science as a context for understanding environmental policies and resource management practices. Our planet is facing unprecedented environmental challenges, from oil spills to global climate change. This texts explores the science behind these problems; preparing you to make an informed, invaluable contribution to Earth's future.

CC BY-NC-SAEnvironmental Engineering (Sustainability and Conservation)Engineering 0 lượt xem
Encyclopedia of Biological Methods

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Encyclopedia of Biological Methods

Katherine Mattaini · Tufts University

This project was born out of Dr. Mattaini’s experience developing her Biology of Cancer class in Spring 2021. In the syllabus, Dr. Mattaini reveals her two big-picture goals for the course: “First, I would like you to learn enough basics of cancer biology to be able to independently research and answer your future questions about cancer. Second, I will also support you as you strive to become a more nuanced reader of the primary literature, especially as it relates to cancer biology.”

CC BY-SABiotechnologyBiology 0 lượt xem
General Ecology

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General Ecology

Tara Jo Holmberg · CT State Northwestern

Có trong mục lục: 0.1: Themes and Concepts of Biology · Chapter 23: Conservation Biology · 23.1: The Science of Conservation Biology

CC BY-NC-SABiology 0 lượt xem
Online Open Genetics

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Online Open Genetics

Todd Nickle and Isabelle Barrette-Ng · Mount Royal University & University of Calgary

Có trong mục lục: 11: Genomics and Systems Biology · 11.E: Genomics and Systems Biology (Exercises) · 11.S: Genomics and Systems Biology (Summary)

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BIOL 212: Botany Lab

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BIOL 212: Botany Lab

Brad Basehore and Rae Dennis · Harrisburg Area Community College

Introduces students to the basic concepts of plant biology and a survey of major groups of plants and plant-like organisms. This course expands on many of the biological concepts introduced in BIOL 101 - General Biology I, as it includes plant physiology, comparative anatomy and plant classification. Plant reproduction and other major botanical concepts are emphasized through the study of local flora, laboratory exercises and lectures.

CC BY-NCBiology 0 lượt xem
Radicalize the Hive

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Radicalize the Hive

Ang Roell · LibreTexts

This book is a collection of stories from the field and resources for new and intermediate beekeepers interwoven with my own experience as a beekeeper over the last decade.

CC BY-NCEcologyBiology 0 lượt xem
Informal Calculus with Applications to Biological and Environmental Sciences

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Informal Calculus with Applications to Biological and Environmental Sciences

Tyler Seacrest · University of Montana Western

This book is an approachable introduction to calculus with applications to biology and environmental science. The text focuses on intuitive understanding of concepts, but still covers most of the algebra and calculations common in a survey of calculus course.

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Inanimate Life

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Inanimate Life

George M. Briggs · SUNY Geneseo

Có trong mục lục: 1.24: Material movement and diffusions multiple roles in plant biology

CC BY-NCBotanyBiology 0 lượt xem