Nguồn ngoài

Concepts in Biophysical Chemistry

These notes cover the physical chemistry governing molecular behavior in biological systems. It is meant as a resource for those that want to educate themselves or others in biophysics for chemists.

Biological Chemistry Chemistry

Tác giả: Andrei Tokmakoff
Nhà xuất bản: University of Chicago
Nguồn: LibreTexts
Giấy phép: CC BY-NC-SA
Ngôn ngữ: EN
Danh mục: Khoa học cơ bản

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Mục lục· 111 mục

01: Water and Aqueous Solutions
01: Fluids
1.01: What is a Fluid
1.02: Radial Distribution Function
1.03: Excluded Volume
02: Lattice Model of a Fluid
2.01: Lattice Models
2.02: Ideal Lattice Gas
2.03: Binary Fluid
03: Water's Physical Properties
3.01: Water Structure
3.02: Water Dynamics
3.03: Electrical Properties of Pure Water
04: Solvation
4.01: Solvation
4.02: Solvation Thermodynamics
4.03: Solvation Dynamics and Reorganization Energy
05: Hydrophobicity
5.01: Hydrophobic Solvation- Thermodynamics
5.02: Hydrophobic Solvation- Solute Size Effect
5.03: Hydrophobic Collapse
06: Electrical Properties of Water and Aqueous Solutions
6.01: Electrostatics
6.02: Dielectric Constant and Screening
6.03: Free Energy of Ions in Solution
6.04: Ion Distributions in Electrolyte Solution
6.05: PoissonBoltzmann Equation
6.06: DebyeHuckel Theory
6.07: Ion Distributions Near a Charged Interface
6.08: Ion Distributions Near a Charged Sphere
02: Macromolecules
07: Statistical Description of Macromolecular Structure
7.01: Segment Models
7.02: Excluded Volume Effects
7.03: Polymer Loops
08: Polymer Lattice Models
8.01: Entropy of Single Polymer Chain
8.02: Self-Avoiding Walks
8.03: Conformational Changes with Temperature
8.04: FloryHuggins Model of Polymer Solutions
8.05: PolymerSolvent Interactions
09: Macromolecular Mechanics
9.01: Force and Work
9.02: Worm-like Chain
9.03: Polymer Elasticity and ForceExtension Behavior
03: Diffusion
10: Diffusion
10.01: Continuum Diffusion
10.02: Solving the Diffusion Equation
10.03: Steady-State Solutions
11: Brownian Motion
11.01: Random Walk and Diffusion
11.02: Markov Chain and Stochastic Processes
11.03: Fluorescence Correlation Spectroscopy
11.04: Orientational Diffusion
12: Diffusion in a Potential
12.01: Diffusion with Drift
12.02: Biased Random Walk
12.03: Diffusion in a Potential
13: Friction and the Langevin Equation
13.01: Langevin Equation
13.02: Brownian Dynamics
04: Transport
14: Hydrodynamics
14.01: Newtonian Fluids
14.02: Stokes Law
14.03: Laminar and Turbulent Flow
15: Passive Transport
15.01: Dimensionality Reduction
15.02: Facilitated Diffusion
15.03: Search Times in Facilitated Diffusion
16: Targeted Diffusion
16.01: Diffusion to Capture
16.02: Diffusion to Capture with Interactions
16.03: Mean First Passage Time
17: Directed and Active Transport
17.01: Motor Proteins
17.02: Passive vs Active Transport
17.03: Brownian Ratchet
17.4: Polymerization Ratchet and Translocation Ratchet
05: Cooperativity
18: Cooperativity
18.01: HelixCoil Transition
18.02: Two-State Thermodynamics
19: Self-Assembly
19.01: Micelle Formation
19.02: Classical Nucleation Theory
19.03: Why Are Micelles Uniform in Size
19.04: Shape of Self-Assembled Amphiphiles
06: Dynamics and Kinetics
20: Protein Folding
20.01: HelixCoil Transition
20.02: Two-State Thermodynamics
21: Binding and Association
21.01: Thermodynamics and Biomolecular Reactions
21.02: Statistical Thermodynamics of Biomolecular Reactions
21.03: DNA Hybridization
21.04: Biomolecular Kinetics
21.05: Diffusion-Limited Reactions
21.06: Protein Recognition and Binding
21.07: Forces Guiding Binding
21.08: Specificity in Recognition and Binding
22: Biophysical Reaction Dynamics
22.01: Concepts and Definitions
22.02: Computing Dynamics
22.03: Representations of Dynamics
22.04: Analyzing Trajectories
22.05: Time-Correlation Functions
23: Barrier Crossing and Activated Processes
23.01: Transition State Theory
23.02: Kramers Theory