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Fundamentals of Biochemistry IV - Special Topics
In Volume V, we present two types of assessments for use by instructors and students. Literature-based Guided Assessments (LGAs) contain problems derived from the research literature. They are designed to help students read and understand the chosen research paper. The questions in the LGAs integrate many areas of biochemistry represented across many chapters in a biochemistry textbook. Molecular modeling tutorials and problems are provided to help students create their own, web-based molecu
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- Henry Jakubowski and Patricia Flatt
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- LibreTexts
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Mục lục· 56 mục
- Chapter 1 - Problems
- iCn3D for Biomolecular Visualization Learning Themes and Goals
- BioMolViz Framework
- BioMolViz Theme: Alternate Renderings (AR)
- BioMolViz Theme: Atomic Geometry (AG)
- BioMolViz Theme: Construction and Annotation (CA)
- BioMolViz Theme: Ligands and Modifications (LM) ✔
- BioMolViz Theme: Macromolecular Assemblies (MA)
- BioMolViz Theme: Macromolecular Building Blocks (MB) ✔
- BioMolViz Theme: Molecular Dynamics (MD)
- BioMolViz Theme: Molecular Interactions (MI)
- BioMolViz Theme: Structural Model Skepticism (SK)
- BioMolViz Theme: StructureFunction Relationship (SF)
- BioMolViz Theme: Symmetry Asymmetry Recognition (SA)
- BioMolViz Theme: Topology and Connectivity (TC)
- Biomolviz- Constructing iCn3D Models to Target Biomolecular Visualization Skills
- iCn3D Molecular Modeling Tutorials
- iCn3D Basics: Analysis Menu
- iCn3D Basics: Mouse Commands
- iCn3D Basics: Selecting and Viewing with a mouse
- iCn3D Basics: Style and Color
- iCn3D Basics: File Types
- iCn3D Basics: Saving Files
- iCn3D Intro Tutorial A: Modeling a Short Peptide in a Protein
- iCn3D Intro Tutorial B: Rendering a Protein
- iCn3D Intro Tutorial C: Finding Pockets in Proteins
- iCn3D Intro Tutorial D: Modeling Psychoactive Drugs in Target Proteins
- iCn3D Skill: Aligning two structures
- iCn3D Skill: Analysis of Noncovalent Interactions
- iCn3D Skill: Creating and Saving Selections
- iCn3D Skill: Mutations
- iCn3D Skill: Selection through Sequence and Annotations
- iCn3D Skill: Showing a Protein-Protein Interface
- iCn3D Skill: Alternative Rendering and Saving Files
- iCn3D Skill: Displays surface of a protein - Superoxide Dismutase
- iCn3D Tutorial Question: Information and Visualizaiton Transduction - 1D to 3D Structural Function Emergence
- iCn3D Tutorial Question: Intermediate Problem - Cyclooxygenase II
- iCn3D Tutorial: Asymmetric Unit Unit cell and Molecular Assemblies
- iCn3D Tutorial: Binding interactions of SARS-Cov-2 Spike receptor domain with ACE2
- iCn3D Tutorial: Overlay many ACE2 receptor binding domain analogous to SARS-Co2 RBD using Blast
- iCn3D Tutorial: Protein Kinase B (AKT)
- Literature Based Guided Assessments (LGAs) - Traditional
- A Glycan-Receptor Complex: Structural and Binding Analyses
- Carbohydrates and Glycans 1: Synthesis of a glycan hairpin
- Gluten and Celiac Disease
- Voltage-Gated Sodium Channel
- Voltage-Gated Sodium Channel - Questions
- Literature Based Guided Assessments (LGAs): Global Challenges
- 1. Global Challenges: An Introduction
- Addiction: Alcohol Use Disorder - PART 2. Effect of Allosteric Modulators on the GABAA Receptor (Master)
- Addiction: Alcohol Use Disorder - PART 3. Ethanol and the GABAA Receptor (Master)
- Addiction: Alcohol Use Disorder (AUD)- PART 1. Introduction to AUD and the GABAA Receptor (Master)
- Carbon Capture Using Carbonic Anhydrase
- Information Integrity - Data and Analysis
- Information Integrity: Visual Images
- Trauma and Health